map_mice_data#

qx_mice.process_mice.map_mice_data(sinfo, options, overwrite=False, thread=0)#

map_mice_data [... processing options]

Runs the command to prepare a QuNex study for mice preprocessing.

Warning

Preprocessed mica data is required.

Parameters

--batchfile (str, default ''):: The batch.txt file with all the sessions information.
--sessionsfolder (str, default '.'):: The path to the study/sessions folder, where the imaging data is supposed to go.
--bolds (str, default ''):: Which bold images to process. You can select bolds through their number, name or task (e.g. rest), you can chain multiple conditions together by providing a comma separated list.
--parsessions (int, default 1):: How many sessions to run in parallel.
--parelements (int, default 1):: How many elements (e.g. bolds) to run in parallel.
--overwrite (str, default 'no'):: Whether to overwrite target files that already exist (yes) or not (no).
--logfolder (str, default ''):: The path to the folder where runlogs and comlogs are to be stored, if other than default.

Output files

The results of this step will be present in the functional folder in the sessions's root:

study
└─ sessions
├─ session1
|  └─ functional
└─ session2
    └─ functional

Examples

qunex map_mice_data \
  --sessionsfolder="/data/mice_study/sessions" \
  --sessions="/data/mice_study/processsing/batch.txt"

QuNex documentation