List of commands
List of commands#
QuNex commands are used through the qunex call. The general use form is:
qunex <command_name> --parameter="<value>" --parameter="<value>" ...
For more information on how to use QuNex refer to QuNex commands and general usage overview.
Available commands:
- bruker_to_dicom
- change_dicom_files
- check_fidl
- compute_bold_stats
- create_batch
- create_bold_brain_masks
- create_conc
- create_list
- create_session_info
- create_stats_report
- create_study
- create_ws_palm_design
- dwi_bedpostx_gpu
- dwi_dtifit
- dwi_eddy_qc
- dwi_f99
- dwi_legacy_gpu
- dwi_noddi_gpu
- dwi_parcellate
- dwi_pre_tractography
- dwi_probtrackx_dense_gpu
- dwi_seed_tractography_dense
- dwi_xtract
- extract_nuisance_signal
- extract_roi
- fc_compute_ab_corr
- fc_compute_ab_corr_kca
- fc_compute_gbc3
- fc_compute_gbcd
- fc_compute_roifc
- fc_compute_roifc_group
- fc_compute_seedmaps
- fc_compute_seedmaps_group
- fc_compute_seedmaps_multiple
- fc_extract_roi_timeseries_masked
- fc_extract_trial_timeseries_masked
- fc_preprocess
- fc_preprocess_conc
- fc_segment_mri
- fsl_feat
- fsl_melodic
- general_compute_bold_list_stats
- general_compute_bold_stats
- general_compute_group_bold_stats
- general_extract_glm_volumes
- general_extract_roi_glm_values
- general_extract_roi_values
- general_find_peaks
- general_glm_predict
- general_image_conjunction
- general_image_overlap
- general_parcellated2dense
- general_plot_bold_timeseries
- general_plot_bold_timeseries_list
- general_qa_concfile
- get_dicom_fields
- hcp_apply_auto_reclean
- hcp_asl
- hcp_dedrift_and_resample
- hcp_diffusion
- hcp_fmri_surface
- hcp_fmri_volume
- hcp_freesurfer
- hcp_icafix
- hcp_longitudinal_freesurfer
- hcp_make_average_dataset
- hcp_msmall
- hcp_post_fix
- hcp_post_freesurfer
- hcp_pre_freesurfer
- hcp_reapply_fix
- hcp_task_fmri_analysis
- hcp_temporal_ica
- import_bids
- import_dicom
- import_hcp
- join_fidl
- join_fidl_folder
- map_hcp_data
- map_mice_data
- parcellate_anat
- parcellate_bold
- preprocess_bold
- preprocess_conc
- preprocess_mice
- run_palm
- run_qc
- run_turnkey
- setup_hcp
- setup_mice
- split_fidl
- stats_compute_behavioral_correlations
- stats_p2z
- stats_ttest_dependent
- stats_ttest_independent
- stats_ttest_zero