HCP fMRISurface pipeline#


For all HCP pipeline steps please refer to Running the HCP pipeline. For an overview on how to prepare data and run the HCP preprocessing steps, see Overview of steps for running the HCP pipeline.

The fifth step is used to perform the following operations on BOLD image files:

  • creating fMRI ribbon

  • surface smoothing

  • subcortical processing

  • generation of dense timeseries

In QuNex the HCP pipeline is run using the hcp_fmri_surface command. The full list of command's parameters along with example calls can be found at hcp_fmri_surface.