HCP Longitudinal FreeSurfer

For all HCP pipeline steps please refer to Running the HCP pipeline. For an overview on how to prepare data and run the HCP preprocessing steps, see Overview of steps for running the HCP pipeline.

HCP Longitudinal FreeSurfer pipeline is implemented into QuNex via the hcp_longitudinal_freesurfer command. The command expects the first three HCP preprocessing steps (hcp_pre_freesurfer, hcp_freesurfer and hcp_post_freesurfer) to have been run and finished successfully.

The full list of command's parameters along with example calls can be found at hcp_longitudinal_freesurfer.