run_freesurfer_subcortical_segmentation

qx_utilities.processing.fs.run_freesurfer_subcortical_segmentation(sinfo, options, overwrite=False, thread=0)

run_freesurfer_subcortical_segmentation [... processing options]

Run subcortical-only FreeSurfer segmentation on NIL preprocessed images.

Parameters

--batchfile (str, default ''):

The batch.txt file with all the sessions information.

--sessions (str, default ''):

A list of sessions to process.

--sessionsfolder (str, default '.'):

The path to the study/sessions folder.

--overwrite (str, default 'no'):

Whether to overwrite existing outputs (yes) or not (no).

--logfolder (str, default ''):

The path to the folder where runlogs and comlogs are to be stored, if other than default.