map2pals

qx_utilities.general.fourdfp.map2pals(volume, metric, atlas='711-2C', method='interpolated', mapping='afm')

map2pals volume=<volume file> metric=<metric file> [atlas=711-2C] [method=interpolated] [mapping=afm]

Map volume files to metric surface files using PALS12 surface atlas.

Parameters

--volume (str):

A volume file or a space separated list of volume files - put in quotes.

--metric (str):

The name of the metric file that stores the mapping.

--atlas (str, default '711-2C'):

Volume atlas from which to map (711-2C by default or 711-2B, AFNI, FLIRT, FNIRT, SPM2, SPM5, SPM95, SPM96, SPM99, MRITOTAL).

--method (str, default 'interpolated'):

Interpolated, maximum, enclosing, strongest, Gaussian (for other options see caret_command).

--mapping (str, default 'afm'):

A single mapping option or a space separated list in quotes.

The options are: - afm (average fiducial mapping) - mfm (average of mapping to all PALS cases (multifiducial mapping)) - min (minimum of mapping to all PALS cases) - max (maximum of mapping to all PALS cases) - std-dev (sample standard deviation of mapping to all PALS cases) - std-error (standard error of mapping to all PALS cases) - all-cases (mapping to each of the PALS12 cases)